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SMPDL3A sphingomyelin phosphodiesterase acid like 3A [ Ovis aries (sheep) ]

Gene ID: 101120499, updated on 8-Mar-2024

Summary

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Gene symbol
SMPDL3A
Gene description
sphingomyelin phosphodiesterase acid like 3A
See related
EnsemblRapid:ENSOARG00020021068
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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See SMPDL3A in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 8 NC_056061.1 (15666345..15683701, complement)

Chromosome 8 - NC_056061.1Genomic Context describing neighboring genes Neighboring gene triadin Neighboring gene uncharacterized LOC105608241 Neighboring gene clavesin 2 Neighboring gene fatty acid binding protein 7 Neighboring gene cAMP-dependent protein kinase inhibitor beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056061.1 Chromosome 8 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056061.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    15666345..15683701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012182491.4 → XP_012037881.2  acid sphingomyelinase-like phosphodiesterase 3a isoform X3

    UniProtKB/TrEMBL
    W5PE73
    Conserved Domains (1) summary
    cd00842
    Location:2 → 257
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  2. XM_042253233.1 → XP_042109167.1  acid sphingomyelinase-like phosphodiesterase 3a isoform X3

    UniProtKB/TrEMBL
    W5PE73
    Conserved Domains (1) summary
    cd00842
    Location:2 → 257
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  3. XM_027972336.2 → XP_027828137.1  acid sphingomyelinase-like phosphodiesterase 3a isoform X1

    UniProtKB/TrEMBL
    W5PE73
    Related
    ENSOARP00020026854.1, ENSOART00020032500.2

  4. XM_042253232.2 → XP_042109166.1  acid sphingomyelinase-like phosphodiesterase 3a isoform X2

    UniProtKB/TrEMBL
    W5PE73
    Conserved Domains (1) summary
    cd00842
    Location:9 → 305
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  5. XM_027972337.3 → XP_027828138.2  acid sphingomyelinase-like phosphodiesterase 3a isoform X4

    UniProtKB/TrEMBL
    A0A836A1Q7
    Related
    ENSOARP00020026970.1, ENSOART00020032638.2
    Conserved Domains (1) summary
    cd00842
    Location:77 → 373
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein Strain
Heading Accession and Version

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