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CNTN1 contactin 1 [ Ovis aries (sheep) ]

Gene ID: 101118005, updated on 10-Oct-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
See related
EnsemblRapid:ENSOARG00020000548
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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See CNTN1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 3 NC_056056.1 (146056768..146474105, complement)

Chromosome 3 - NC_056056.1Genomic Context describing neighboring genes Neighboring gene PDZ domain containing ring finger 4 Neighboring gene dihydrofolate reductase-like Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene mucin-19-like Neighboring gene mucin 19, oligomeric

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056056.1 Chromosome 3 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056056.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    146056768..146474105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042246873.2 → XP_042102807.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    A0A836D463, W5QF51
    Related
    ENSOARP00020000635.2, ENSOART00020000799.2
    Conserved Domains (6) summary
    cd05851
    Location:241 → 328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    smart00409
    Location:422 → 501
    IG; Immunoglobulin
    smart00410
    Location:59 → 126
    IG_like; Immunoglobulin like
    cd00063
    Location:610 → 697
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:348 → 352
    Ig; Ig strand B [structural motif]
    cl11960
    Location:332 → 408
    Ig; Immunoglobulin domain

  2. XM_060412756.1 → XP_060268739.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    W5QF51

  3. XM_060412755.1 → XP_060268738.1  contactin-1 isoform X1

    UniProtKB/TrEMBL
    W5QF51

  4. XM_042246874.2 → XP_042102808.1  contactin-1 isoform X2

    Related
    ENSOARP00020000677.2, ENSOART00020000849.2
    Conserved Domains (5) summary
    cd05851
    Location:241 → 328
    IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
    cd00096
    Location:42 → 46
    Ig; Ig strand A [structural motif]
    cd04970
    Location:503 → 602
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    cd05727
    Location:142 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
    cl11960
    Location:40 → 134
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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