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CHD6 chromodomain helicase DNA binding protein 6 [ Ovis aries (sheep) ]

Gene ID: 101104333, updated on 10-Oct-2024

Summary

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Gene symbol
CHD6
Gene description
chromodomain helicase DNA binding protein 6
See related
EnsemblRapid:ENSOARG00020014349
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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See CHD6 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
42
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 13 NC_056066.1 (70012365..70216103, complement)

Chromosome 13 - NC_056066.1Genomic Context describing neighboring genes Neighboring gene receptor-binding cancer antigen expressed on SiSo cells-like Neighboring gene lipin 3 Neighboring gene elastin microfibril interfacer 3 Neighboring gene uncharacterized LOC121816276 Neighboring gene uncharacterized LOC132657575

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056066.1 Chromosome 13 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056066.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    70012365..70216103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060397044.1 → XP_060253027.1  chromodomain-helicase-DNA-binding protein 6 isoform X3

  2. XM_060397041.1 → XP_060253024.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

  3. XM_027977203.2 → XP_027833004.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A836CY43
    Conserved Domains (6) summary
    PTZ00121
    Location:103 → 285
    PTZ00121; MAEBL; Provisional
    PLN03142
    Location:460 → 985
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03247
    Location:2321 → 2711
    PHA03247; large tegument protein UL36; Provisional
    cd18663
    Location:372 → 430
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:288 → 353
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18058
    Location:461 → 682
    DEXHc_CHD6; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 6

  4. XM_027977202.2 → XP_027833003.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A836CY43
    Conserved Domains (6) summary
    PTZ00121
    Location:103 → 285
    PTZ00121; MAEBL; Provisional
    PLN03142
    Location:460 → 985
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03247
    Location:2321 → 2711
    PHA03247; large tegument protein UL36; Provisional
    cd18663
    Location:372 → 430
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:288 → 353
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18058
    Location:461 → 682
    DEXHc_CHD6; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 6

  5. XM_060397045.1 → XP_060253028.1  chromodomain-helicase-DNA-binding protein 6 isoform X3

  6. XM_042230142.1 → XP_042086076.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A836CY43
    Related
    ENSOARP00020018176.1, ENSOART00020021953.2
    Conserved Domains (6) summary
    PTZ00121
    Location:103 → 285
    PTZ00121; MAEBL; Provisional
    PLN03142
    Location:460 → 985
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03247
    Location:2321 → 2711
    PHA03247; large tegument protein UL36; Provisional
    cd18663
    Location:372 → 430
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:288 → 353
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18058
    Location:461 → 682
    DEXHc_CHD6; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 6

  7. XM_060397042.1 → XP_060253025.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

  8. XM_042230144.2 → XP_042086078.1  chromodomain-helicase-DNA-binding protein 6 isoform X4

    UniProtKB/TrEMBL
    A0A836CY43
    Conserved Domains (2) summary
    PLN03142
    Location:1 → 498
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    PHA03247
    Location:1834 → 2224
    PHA03247; large tegument protein UL36; Provisional

  9. XM_060397043.1 → XP_060253026.1  chromodomain-helicase-DNA-binding protein 6 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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