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ATXN1L ataxin 1 like [ Ovis aries (sheep) ]

Gene ID: 101103748, updated on 8-Mar-2024

Summary

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Gene symbol
ATXN1L
Gene description
ataxin 1 like
See related
EnsemblRapid:ENSOARG00020014127
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
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Genomic context

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See ATXN1L in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 14 NC_056067.1 (38758290..38769283, complement)

Chromosome 14 - NC_056067.1Genomic Context describing neighboring genes Neighboring gene IST1 factor associated with ESCRT-III Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC132657747 Neighboring gene zinc finger protein 821 Neighboring gene GEL complex subunit OPTI-like Neighboring gene adaptor related protein complex 1 subunit gamma 1 Neighboring gene small nucleolar RNA SNORD71

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056067.1 Chromosome 14 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056067.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    38758290..38769283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004015117.4 → XP_004015166.1  ataxin-1-like

    See identical proteins and their annotated locations for XP_004015166.1

    UniProtKB/TrEMBL
    A0A6P3EC94, A0A836A3H9, W5PNB0
    Related
    ENSOARP00020042926.1, ENSOART00020074531.1
    Conserved Domains (1) summary
    pfam08517
    Location:474 → 578
    AXH; Ataxin-1 and HBP1 module (AXH)

  2. XM_012190071.3 → XP_012045461.1  ataxin-1-like

    See identical proteins and their annotated locations for XP_012045461.1

    UniProtKB/TrEMBL
    A0A6P3EC94, A0A836A3H9, W5PNB0
    Related
    ENSOARP00020054679.1, ENSOART00020047231.1
    Conserved Domains (1) summary
    pfam08517
    Location:474 → 578
    AXH; Ataxin-1 and HBP1 module (AXH)
Nucleotide Protein Strain
Heading Accession and Version

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