U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HBP1 HMG-box transcription factor 1 [ Ovis aries (sheep) ]

Gene ID: 101103467, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
HBP1
Gene description
HMG-box transcription factor 1
See related
EnsemblRapid:ENSOARG00020011211
Gene type
protein coding
RefSeq status
MODEL
Organism
Ovis aries
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HBP1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current ARS-UI_Ramb_v3.0 (GCF_016772045.2) 4 NC_056057.1 (49785156..49815717)

Chromosome 4 - NC_056057.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132659735 Neighboring gene large ribosomal subunit protein uL22m-like Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene uncharacterized LOC121819398 Neighboring gene component of oligomeric golgi complex 5 Neighboring gene G protein-coupled receptor 22 Neighboring gene dihydrouridine synthase 4 like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_056057.1 Chromosome 4 Reference ARS-UI_Ramb_v3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
HMG box-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_016772045.2-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UI_Ramb_v3.0 Primary Assembly

Genomic

  1. NC_056057.1 Reference ARS-UI_Ramb_v3.0 Primary Assembly

    Range
    49785156..49815717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042248527.2 → XP_042104461.1  HMG box-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    W5P4R4
    Conserved Domains (2) summary
    smart00536
    Location:212 → 338
    AXH; domain in Ataxins and HMG containing proteins
    cd01388
    Location:431 → 502
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  2. XM_004007846.6 → XP_004007895.2  HMG box-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3E418, W5P4R4
    Related
    ENSOARP00020014105.2, ENSOART00020017084.2
    Conserved Domains (2) summary
    smart00536
    Location:222 → 348
    AXH; domain in Ataxins and HMG containing proteins
    cd01388
    Location:441 → 512
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  3. XM_042248526.2 → XP_042104460.2  HMG box-containing protein 1 isoform X2

    Related
    ENSOARP00020040459.1, ENSOART00020048077.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.