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SETX senataxin [ Felis catus (domestic cat) ]

Gene ID: 101100009, updated on 17-Aug-2024

Summary

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Official Symbol
SETX
Official Full Name
senataxin
Primary source
VGNC:VGNC:67403
See related
EnsemblRapid:ENSFCTG00005022937
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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See SETX in Genome Data Viewer
Location:
chromosome: D4
Exon count:
30
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) D4 NC_058380.1 (89915463..89980468, complement)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) D4 NC_018735.3 (92131917..92196883, complement)

Chromosome D4 - NC_058380.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123381541 Neighboring gene netrin G2 Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene uncharacterized LOC109494026 Neighboring gene transcription termination factor 1-like Neighboring gene transcription termination factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription termination site sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in termination of RNA polymerase II transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable helicase senataxin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058380.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    89915463..89980468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006939577.4 → XP_006939639.1  probable helicase senataxin isoform X1

    See identical proteins and their annotated locations for XP_006939639.1

    UniProtKB/TrEMBL
    A0A5F5XXQ8, M3W739
    Conserved Domains (2) summary
    pfam13086
    Location:1925 → 2210
    AAA_11; AAA domain
    pfam13087
    Location:2217 → 2416
    AAA_12; AAA domain

  2. XM_023242908.2 → XP_023098676.1  probable helicase senataxin isoform X1

    UniProtKB/TrEMBL
    A0A5F5XXQ8, M3W739
    Conserved Domains (2) summary
    pfam13086
    Location:1925 → 2210
    AAA_11; AAA domain
    pfam13087
    Location:2217 → 2416
    AAA_12; AAA domain

  3. XM_023242903.2 → XP_023098671.1  probable helicase senataxin isoform X1

    UniProtKB/TrEMBL
    A0A5F5XXQ8, M3W739
    Conserved Domains (2) summary
    pfam13086
    Location:1925 → 2210
    AAA_11; AAA domain
    pfam13087
    Location:2217 → 2416
    AAA_12; AAA domain

  4. XM_023242909.2 → XP_023098677.1  probable helicase senataxin isoform X1

    UniProtKB/TrEMBL
    A0A5F5XXQ8, M3W739
    Conserved Domains (2) summary
    pfam13086
    Location:1925 → 2210
    AAA_11; AAA domain
    pfam13087
    Location:2217 → 2416
    AAA_12; AAA domain

  5. XM_023242905.2 → XP_023098673.1  probable helicase senataxin isoform X1

    UniProtKB/TrEMBL
    A0A5F5XXQ8, M3W739
    Conserved Domains (2) summary
    pfam13086
    Location:1925 → 2210
    AAA_11; AAA domain
    pfam13087
    Location:2217 → 2416
    AAA_12; AAA domain

  6. XM_045043553.1 → XP_044899488.1  probable helicase senataxin isoform X2

    UniProtKB/TrEMBL
    A0A5F5XU41, A0A5F5XXQ8
    Related
    ENSFCTP00005047702.1, ENSFCTT00005066030.1
    Conserved Domains (2) summary
    cd18042
    Location:1926 → 2251
    DEXXQc_SETX; DEXXQ-box helicase domain of SETX
    pfam13087
    Location:2217 → 2361
    AAA_12; AAA domain

  7. XM_023242904.2 → XP_023098672.1  probable helicase senataxin isoform X1

    UniProtKB/TrEMBL
    A0A5F5XXQ8, M3W739
    Conserved Domains (2) summary
    pfam13086
    Location:1925 → 2210
    AAA_11; AAA domain
    pfam13087
    Location:2217 → 2416
    AAA_12; AAA domain

  8. XM_023242906.2 → XP_023098674.1  probable helicase senataxin isoform X1

    UniProtKB/TrEMBL
    A0A5F5XXQ8, M3W739
    Related
    ENSFCTP00005047438.1, ENSFCTT00005065561.1
    Conserved Domains (2) summary
    pfam13086
    Location:1925 → 2210
    AAA_11; AAA domain
    pfam13087
    Location:2217 → 2416
    AAA_12; AAA domain

  9. XM_023242907.2 → XP_023098675.1  probable helicase senataxin isoform X1

    UniProtKB/TrEMBL
    A0A5F5XXQ8, M3W739
    Conserved Domains (2) summary
    pfam13086
    Location:1925 → 2210
    AAA_11; AAA domain
    pfam13087
    Location:2217 → 2416
    AAA_12; AAA domain

  10. XM_003996022.5 → XP_003996071.1  probable helicase senataxin isoform X1

    See identical proteins and their annotated locations for XP_003996071.1

    UniProtKB/TrEMBL
    A0A5F5XXQ8, M3W739
    Conserved Domains (2) summary
    pfam13086
    Location:1925 → 2210
    AAA_11; AAA domain
    pfam13087
    Location:2217 → 2416
    AAA_12; AAA domain

  11. XM_045043554.1 → XP_044899489.1  probable helicase senataxin isoform X3

    UniProtKB/TrEMBL
    A0A5F5XXQ8
    Conserved Domains (2) summary
    cd18808
    Location:2252 → 2362
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd18042
    Location:1926 → 2251
    DEXXQc_SETX; DEXXQ-box helicase domain of SETX
Nucleotide Protein
Heading Accession and Version

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