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VCAM1 vascular cell adhesion molecule 1 [ Felis catus (domestic cat) ]

Gene ID: 101088865, updated on 17-Aug-2024

Summary

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Official Symbol
VCAM1
Official Full Name
vascular cell adhesion molecule 1
Primary source
VGNC:VGNC:66930
See related
EnsemblRapid:ENSFCTG00005019353
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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See VCAM1 in Genome Data Viewer
Location:
chromosome: C1
Exon count:
9
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) C1 NC_058375.1 (86004086..86022260)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) C1 NC_018730.3 (86473032..86491367)

Chromosome C1 - NC_058375.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 88 Neighboring gene 60S ribosomal protein L13a-like Neighboring gene exostosin like glycosyltransferase 2 Neighboring gene solute carrier family 30 member 7 Neighboring gene receptor of activated protein C kinase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vascular cell adhesion protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058375.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    86004086..86022260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011284836.4 → XP_011283138.1  vascular cell adhesion protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A337RXZ6
    Conserved Domains (5) summary
    cd07689
    Location:125 → 223
    Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:247 → 307
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:528 → 605
    IG_like; Immunoglobulin like
    pfam07679
    Location:322 → 407
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:38 → 106
    Ig; Immunoglobulin domain

  2. XM_003990367.5 → XP_003990416.2  vascular cell adhesion protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A337RXZ6, M3WED4
    Related
    ENSFCTP00005041440.1, ENSFCTT00005056265.1
    Conserved Domains (6) summary
    cd07689
    Location:125 → 223
    Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:247 → 307
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:528 → 605
    IG_like; Immunoglobulin like
    pfam07679
    Location:322 → 407
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:617 → 681
    Ig_3; Immunoglobulin domain
    cl11960
    Location:38 → 106
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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