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CD6 CD6 molecule [ Felis catus (domestic cat) ]

Gene ID: 101083032, updated on 17-Aug-2024

Summary

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Official Symbol
CD6
Official Full Name
CD6 molecule
Primary source
VGNC:VGNC:60635
See related
EnsemblRapid:ENSFCTG00005032957
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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See CD6 in Genome Data Viewer
Location:
chromosome: D1
Exon count:
13
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) D1 NC_058377.1 (104937304..104977831)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) D1 NC_018732.3 (107142147..107182687)

Chromosome D1 - NC_058377.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 109 Neighboring gene transmembrane protein 132A Neighboring gene solute carrier family 15 member 3 Neighboring gene CD5 molecule Neighboring gene VPS37C subunit of ESCRT-I Neighboring gene pregnancy-associated glycoprotein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-cell differentiation antigen CD6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058377.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    104937304..104977831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045039375.1 → XP_044895310.1  T-cell differentiation antigen CD6 isoform X4

    UniProtKB/TrEMBL
    A0A5F5XFG0
    Conserved Domains (1) summary
    smart00202
    Location:165 → 264
    SR; Scavenger receptor Cys-rich

  2. XM_045039376.1 → XP_044895311.1  T-cell differentiation antigen CD6 isoform X5

    UniProtKB/TrEMBL
    A0A5F5XFG0
    Conserved Domains (1) summary
    smart00202
    Location:165 → 264
    SR; Scavenger receptor Cys-rich

  3. XM_045039374.1 → XP_044895309.1  T-cell differentiation antigen CD6 isoform X3

    UniProtKB/TrEMBL
    A0A5F5XFG0
    Related
    ENSFCTP00005060880.1, ENSFCTT00005091022.1
    Conserved Domains (1) summary
    smart00202
    Location:165 → 264
    SR; Scavenger receptor Cys-rich

  4. XM_006937371.5 → XP_006937433.2  T-cell differentiation antigen CD6 isoform X1

    UniProtKB/TrEMBL
    M3WJ99
    Related
    ENSFCTP00005060836.1, ENSFCTT00005090920.1
    Conserved Domains (1) summary
    smart00202
    Location:165 → 264
    SR; Scavenger receptor Cys-rich

  5. XM_003993494.6 → XP_003993543.3  T-cell differentiation antigen CD6 isoform X2

    UniProtKB/TrEMBL
    M3WJ99
    Related
    ENSFCTP00005060864.1, ENSFCTT00005090985.1
    Conserved Domains (1) summary
    smart00202
    Location:165 → 264
    SR; Scavenger receptor Cys-rich

  6. XM_019812482.3 → XP_019668041.2  T-cell differentiation antigen CD6 isoform X6

    UniProtKB/TrEMBL
    A0A5F5XZ00
    Related
    ENSFCTP00005060854.1, ENSFCTT00005090965.1
    Conserved Domains (1) summary
    smart00202
    Location:165 → 264
    SR; Scavenger receptor Cys-rich
Nucleotide Protein
Heading Accession and Version

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