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THUMPD3 THUMP domain containing 3 [ Felis catus (domestic cat) ]

Gene ID: 101082638, updated on 17-Aug-2024

Summary

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Official Symbol
THUMPD3
Official Full Name
THUMP domain containing 3
Primary source
VGNC:VGNC:66180
See related
EnsemblRapid:ENSFCTG00005001901
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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See THUMPD3 in Genome Data Viewer
Location:
chromosome: A2
Exon count:
12
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) A2 NC_058369.1 (50811527..50834931)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) A2 NC_018724.3 (50735107..50758460)

Chromosome A2 - NC_058369.1Genomic Context describing neighboring genes Neighboring gene RAD18 E3 ubiquitin protein ligase Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene uncharacterized LOC102899285 Neighboring gene SET domain containing 5 Neighboring gene LHFPL tetraspan subfamily member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058369.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    50811527..50834931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004001397.4 → XP_004001446.2  THUMP domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_004001446.2

    UniProtKB/TrEMBL
    A0A5F5XQB7, M3W5F4
    Related
    ENSFCTP00005002921.1, ENSFCTT00005004901.1
    Conserved Domains (2) summary
    cd11715
    Location:41 → 286
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    pfam01170
    Location:293 → 478
    UPF0020; Putative RNA methylase family UPF0020

  2. XM_011280179.4 → XP_011278481.1  THUMP domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_011278481.1

    UniProtKB/TrEMBL
    A0A5F5XQB7, M3W5F4
    Conserved Domains (2) summary
    cd11715
    Location:41 → 286
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    pfam01170
    Location:293 → 478
    UPF0020; Putative RNA methylase family UPF0020

  3. XM_011280180.4 → XP_011278482.1  THUMP domain-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_011278482.1

    UniProtKB/TrEMBL
    A0A5F5XQB7, M3W5F4
    Conserved Domains (2) summary
    cd11715
    Location:41 → 286
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    pfam01170
    Location:293 → 478
    UPF0020; Putative RNA methylase family UPF0020

  4. XM_019824943.3 → XP_019680502.1  THUMP domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A5F5XQB7
    Conserved Domains (2) summary
    smart00981
    Location:160 → 223
    THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs
    pfam01170
    Location:233 → 418
    UPF0020; Putative RNA methylase family UPF0020
Nucleotide Protein
Heading Accession and Version

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