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GGPS1 geranylgeranyl diphosphate synthase 1 [ Felis catus (domestic cat) ]

Gene ID: 101082438, updated on 17-Aug-2024

Summary

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Official Symbol
GGPS1
Official Full Name
geranylgeranyl diphosphate synthase 1
Primary source
VGNC:VGNC:62539
See related
EnsemblRapid:ENSFCTG00005020063
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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See GGPS1 in Genome Data Viewer
Location:
chromosome: D2
Exon count:
7
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) D2 NC_058378.1 (13421800..13432346, complement)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) D2 NC_018733.3 (13646364..13656945, complement)

Chromosome D2 - NC_058378.1Genomic Context describing neighboring genes Neighboring gene tubulin folding cofactor E Neighboring gene uncharacterized LOC109492854 Neighboring gene small nucleolar RNA SNORA64/SNORA10 family Neighboring gene AT-rich interaction domain 4B Neighboring gene U6 spliceosomal RNA Neighboring gene RNA binding motif protein 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoprenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl pyrophosphate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058378.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    13421800..13432346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019814302.3 → XP_019669861.1  geranylgeranyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    M3W9L8
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 251
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_045039921.1 → XP_044895856.1  geranylgeranyl pyrophosphate synthase isoform X2

    Conserved Domains (1) summary
    pfam00348
    Location:1 → 196
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_003993903.6 → XP_003993952.1  geranylgeranyl pyrophosphate synthase isoform X1

    See identical proteins and their annotated locations for XP_003993952.1

    UniProtKB/TrEMBL
    M3W9L8
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 251
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_045039920.1 → XP_044895855.1  geranylgeranyl pyrophosphate synthase isoform X2

    Conserved Domains (1) summary
    pfam00348
    Location:1 → 196
    polyprenyl_synt; Polyprenyl synthetase

  5. XM_045039919.1 → XP_044895854.1  geranylgeranyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    M3W9L8
    Related
    ENSFCTP00005042331.1, ENSFCTT00005057634.1
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 251
    polyprenyl_synt; Polyprenyl synthetase

  6. XM_045039922.1 → XP_044895857.1  geranylgeranyl pyrophosphate synthase isoform X2

    Conserved Domains (1) summary
    pfam00348
    Location:1 → 196
    polyprenyl_synt; Polyprenyl synthetase
Nucleotide Protein
Heading Accession and Version

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