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galnt5 polypeptide N-acetylgalactosaminyltransferase 5 [ Takifugu rubripes (torafugu) ]

Gene ID: 101079274, updated on 8-Mar-2024

Summary

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Gene symbol
galnt5
Gene description
polypeptide N-acetylgalactosaminyltransferase 5
See related
Ensembl:ENSTRUG00000007373
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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See galnt5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 1 NC_042285.1 (20380957..20385262, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 1 NC_018890.1 (16161641..16166000, complement)

Chromosome 1 - NC_042285.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115250125 Neighboring gene cytohesin 1 interacting protein Neighboring gene uncharacterized LOC115250126 Neighboring gene uncharacterized LOC115250127 Neighboring gene transfer RNA serine (anticodon UGA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042285.1 Reference fTakRub1.2 Primary Assembly

    Range
    20380957..20385262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011610425.2 → XP_011608727.2  polypeptide N-acetylgalactosaminyltransferase 5

    UniProtKB/TrEMBL
    A0A3B5K155
    Related
    ENSTRUP00000049171.2, ENSTRUT00000050820.2
    Conserved Domains (2) summary
    cd02510
    Location:368 → 671
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:681 → 798
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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