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exosc10 exosome component 10 [ Takifugu rubripes (torafugu) ]

Gene ID: 101078903, updated on 11-Apr-2024

Summary

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Gene symbol
exosc10
Gene description
exosome component 10
See related
Ensembl:ENSTRUG00000012484
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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See exosc10 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
25
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 3 NC_042287.1 (8119031..8126609)
101 previous assembly FUGU5 (GCF_000180615.1) 3 NC_018892.1 (5224339..5231924)

Chromosome 3 - NC_042287.1Genomic Context describing neighboring genes Neighboring gene neural cell adhesion molecule L1-like protein Neighboring gene contactin-3-like Neighboring gene uncharacterized LOC115249225 Neighboring gene tripartite motif-containing protein 16-like Neighboring gene spermidine synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in histone mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent CUT catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent antisense transcript catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent snRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent snoRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome component 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042287.1 Reference fTakRub1.2 Primary Assembly

    Range
    8119031..8126609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003963237.3 → XP_003963286.2  exosome component 10

    UniProtKB/TrEMBL
    H2U3V7, H2U3V9
    Related
    ENSTRUP00000031620.3, ENSTRUT00000031743.3
    Conserved Domains (5) summary
    cd06147
    Location:288 → 478
    Rrp6p_like_exo; DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins
    smart00341
    Location:507 → 587
    HRDC; Helicase and RNase D C-terminal
    TIGR02794
    Location:666 → 782
    tolA_full; TolA protein
    pfam08066
    Location:54 → 141
    PMC2NT; PMC2NT (NUC016) domain
    pfam09805
    Location:735 → 789
    Nop25; Nucleolar protein 12 (25kDa)
Nucleotide Protein
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Gene LinkOut

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