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LOC101078870 VIP36-like protein [ Takifugu rubripes (torafugu) ]

Gene ID: 101078870, updated on 19-Jun-2024

Summary

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Gene symbol
LOC101078870
Gene description
VIP36-like protein
See related
Ensembl:ENSTRUG00000016637
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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Genomic context

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See LOC101078870 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
8
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 21 NC_042305.1 (9953689..9957718, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 21 NC_018910.1 (5935125..5939348, complement)

Chromosome 21 - NC_042305.1Genomic Context describing neighboring genes Neighboring gene zinc finger RNA binding protein Neighboring gene ubiquinol-cytochrome-c reductase complex assembly factor 3 Neighboring gene T-box transcription factor TBX3-like Neighboring gene TM2 domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042305.1 Reference fTakRub1.2 Primary Assembly

    Range
    9953689..9957718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003974756.3 → XP_003974805.2  VIP36-like protein

    UniProtKB/TrEMBL
    A0A674PIC2, H2V019
    Related
    ENSTRUP00000042549.2, ENSTRUT00000042693.3
    Conserved Domains (1) summary
    cl14058
    Location:59 → 302
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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