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dpy19l4 dpy-19 like 4 [ Takifugu rubripes (torafugu) ]

Gene ID: 101077041, updated on 21-Dec-2023

Summary

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Gene symbol
dpy19l4
Gene description
dpy-19 like 4
See related
Ensembl:ENSTRUG00000006943
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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Genomic context

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See dpy19l4 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
20
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 12 NC_042296.1 (1065536..1072446)
101 previous assembly FUGU5 (GCF_000180615.1) 12 NC_018901.1 (650103..657151)

Chromosome 12 - NC_042296.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 1B Neighboring gene titin-like Neighboring gene integrator complex subunit 8 Neighboring gene T-cell differentiation antigen CD6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042296.1 Reference fTakRub1.2 Primary Assembly

    Range
    1065536..1072446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011608856.2 → XP_011607158.1  probable C-mannosyltransferase DPY19L4 isoform X3

    UniProtKB/TrEMBL
    A0A674PLC4
    Conserved Domains (1) summary
    pfam10034
    Location:107 → 761
    Dpy19; Q-cell neuroblast polarisation

  2. XM_011608854.2 → XP_011607156.1  probable C-mannosyltransferase DPY19L4 isoform X1

    UniProtKB/TrEMBL
    A0A674N859, A0A674PLC4
    Related
    ENSTRUP00000069356.1, ENSTRUT00000071485.1
    Conserved Domains (1) summary
    pfam10034
    Location:119 → 773
    Dpy19; Q-cell neuroblast polarisation

  3. XM_011608855.2 → XP_011607157.1  probable C-mannosyltransferase DPY19L4 isoform X2

    UniProtKB/TrEMBL
    A0A674PLC4, H2SXA9
    Related
    ENSTRUP00000017047.2, ENSTRUT00000017120.3
    Conserved Domains (1) summary
    pfam10034
    Location:112 → 766
    Dpy19; Q-cell neuroblast polarisation
Nucleotide Protein
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