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adar adenosine deaminase RNA specific [ Takifugu rubripes (torafugu) ]

Gene ID: 101073967, updated on 8-Mar-2024

Summary

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Gene symbol
adar
Gene description
adenosine deaminase RNA specific
See related
Ensembl:ENSTRUG00000008870
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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See adar in Genome Data Viewer
Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 7 NC_042291.1 (14593794..14605103)
101 previous assembly FUGU5 (GCF_000180615.1) 7 NC_018896.1 (12758955..12771162)

Chromosome 7 - NC_042291.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 27b Neighboring gene neuronal acetylcholine receptor subunit alpha-7 Neighboring gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 Neighboring gene GRB10-interacting GYF protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA-specific adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adenosine to inosine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
double-stranded RNA-specific adenosine deaminase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042291.1 Reference fTakRub1.2 Primary Assembly

    Range
    14593794..14605103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011605826.2 → XP_011604128.2  double-stranded RNA-specific adenosine deaminase isoform X1

    UniProtKB/TrEMBL
    A0A674PAG0
    Conserved Domains (4) summary
    smart00550
    Location:243 → 310
    Zalpha; Z-DNA-binding domain in adenosine deaminases
    smart00552
    Location:922 → 1300
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd19915
    Location:831 → 901
    DSRM_DRADA_rpt3; third double-stranded RNA binding motif of double-stranded RNA-specific adenosine deaminase (DRADA) and similar proteins
    cl00054
    Location:706 → 776
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily

  2. XM_003966240.3 → XP_003966289.2  double-stranded RNA-specific adenosine deaminase isoform X2

    UniProtKB/TrEMBL
    A0A674PAG0, H2TCA4
    Related
    ENSTRUP00000022296.3, ENSTRUT00000022388.3
    Conserved Domains (4) summary
    smart00550
    Location:243 → 310
    Zalpha; Z-DNA-binding domain in adenosine deaminases
    smart00552
    Location:921 → 1299
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd19915
    Location:830 → 900
    DSRM_DRADA_rpt3; third double-stranded RNA binding motif of double-stranded RNA-specific adenosine deaminase (DRADA) and similar proteins
    cl00054
    Location:705 → 775
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily

  3. XM_029838869.1 → XP_029694729.1  double-stranded RNA-specific adenosine deaminase isoform X1

    UniProtKB/TrEMBL
    A0A674PAG0
    Conserved Domains (4) summary
    smart00550
    Location:243 → 310
    Zalpha; Z-DNA-binding domain in adenosine deaminases
    smart00552
    Location:922 → 1300
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd19915
    Location:831 → 901
    DSRM_DRADA_rpt3; third double-stranded RNA binding motif of double-stranded RNA-specific adenosine deaminase (DRADA) and similar proteins
    cl00054
    Location:706 → 776
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
Nucleotide Protein
Heading Accession and Version

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