U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Takifugu rubripes (torafugu) ]

Gene ID: 101073914, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
Ensembl:ENSTRUG00000025659
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sgcd in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 15 NC_042299.1 (6991814..7101545)
101 previous assembly FUGU5 (GCF_000180615.1) 15 NC_018904.1 (3477945..3532551)

Chromosome 15 - NC_042299.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115252806 Neighboring gene uncharacterized LOC115252781 Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene hepatocyte cell adhesion molecule-like Neighboring gene rho GTPase-activating protein 7-like Neighboring gene uncharacterized LOC115252565

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042299.1 Reference fTakRub1.2 Primary Assembly

    Range
    6991814..7101545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029848375.1 → XP_029704235.1  delta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A3B5KIR1, A0A674PJS6
    Related
    ENSTRUP00000055262.2, ENSTRUT00000049673.2
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_029848374.1 → XP_029704234.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A674PJS6

  3. XM_003970843.3 → XP_003970892.2  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A674PJS6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.