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dpy19l3 dpy-19 like C-mannosyltransferase 3 [ Takifugu rubripes (torafugu) ]

Gene ID: 101072122, updated on 8-Mar-2024

Summary

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Gene symbol
dpy19l3
Gene description
dpy-19 like C-mannosyltransferase 3
See related
Ensembl:ENSTRUG00000004503
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
human zebrafish all
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Genomic context

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See dpy19l3 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
20
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 13 NC_042297.1 (2424577..2458735)
101 previous assembly FUGU5 (GCF_000180615.1) 13 NC_018902.1 (560168..591681)

Chromosome 13 - NC_042297.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115252046 Neighboring gene zinc finger protein 507 Neighboring gene neural-cadherin-like Neighboring gene neural-cadherin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L3
Names
dpy-19 like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042297.1 Reference fTakRub1.2 Primary Assembly

    Range
    2424577..2458735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029846262.1 → XP_029702122.1  probable C-mannosyltransferase DPY19L3 isoform X2

    UniProtKB/TrEMBL
    A0A674NAU8, A0A674NRM0
    Related
    ENSTRUP00000076373.1, ENSTRUT00000076745.1
    Conserved Domains (1) summary
    pfam10034
    Location:60 → 715
    Dpy19; Q-cell neuroblast polarisation

  2. XM_029846261.1 → XP_029702121.1  probable C-mannosyltransferase DPY19L3 isoform X1

    UniProtKB/TrEMBL
    A0A674PPF8
    Conserved Domains (1) summary
    pfam10034
    Location:87 → 736
    Dpy19; Q-cell neuroblast polarisation
Nucleotide Protein
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Gene LinkOut

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