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sgca sarcoglycan, alpha [ Takifugu rubripes (torafugu) ]

Gene ID: 101067437, updated on 8-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
Ensembl:ENSTRUG00000009053
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 1 NC_042285.1 (1507429..1511873)
101 previous assembly FUGU5 (GCF_000180615.1) 1 NC_018890.1 (512457..515994)

Chromosome 1 - NC_042285.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene neurabin-2-like Neighboring gene collagen, type I, alpha 1b Neighboring gene inactive all-trans-retinol 13,14-reductase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042285.1 Reference fTakRub1.2 Primary Assembly

    Range
    1507429..1511873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029845771.1 → XP_029701631.1  alpha-sarcoglycan-like

    UniProtKB/TrEMBL
    H2TDL2
    Conserved Domains (1) summary
    pfam05510
    Location:58 → 414
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_003961027.3 → XP_003961076.2  alpha-sarcoglycan-like

    UniProtKB/TrEMBL
    H2TDL2
    Related
    ENSTRUP00000022754.3, ENSTRUT00000022849.3
    Conserved Domains (1) summary
    pfam05510
    Location:58 → 414
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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