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c1galt1la core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a [ Takifugu rubripes (torafugu) ]

Gene ID: 101064009, updated on 8-Mar-2024

Summary

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Gene symbol
c1galt1la
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a
See related
Ensembl:ENSTRUG00000013143
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
c1galt1a
Orthologs
zebrafish all
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Genomic context

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See c1galt1la in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 3 NC_042287.1 (9883534..9887472, complement)
101 previous assembly FUGU5 (GCF_000180615.1) 3 NC_018892.1 (6906237..6910152, complement)

Chromosome 3 - NC_042287.1Genomic Context describing neighboring genes Neighboring gene baculoviral IAP repeat containing 5b Neighboring gene zinc finger protein 385A Neighboring gene tachykinin precursor 3a Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 1a Neighboring gene solute carrier family 26 member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like
Names
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042287.1 Reference fTakRub1.2 Primary Assembly

    Range
    9883534..9887472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029834212.1 → XP_029690072.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like

    UniProtKB/TrEMBL
    A0A674PMC5, H2U925
    Conserved Domains (1) summary
    cl21608
    Location:108 → 282
    Galactosyl_T; Galactosyltransferase

  2. XM_029834210.1 → XP_029690070.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like

    UniProtKB/TrEMBL
    A0A674PMC5, H2U925
    Conserved Domains (1) summary
    cl21608
    Location:108 → 282
    Galactosyl_T; Galactosyltransferase

  3. XM_029834211.1 → XP_029690071.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like

    UniProtKB/TrEMBL
    A0A674PMC5, H2U925
    Related
    ENSTRUP00000086771.1, ENSTRUT00000069658.1
    Conserved Domains (1) summary
    cl21608
    Location:108 → 282
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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