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Heatr4 HEAT repeat containing 4 [ Mus musculus (house mouse) ]

Gene ID: 101055670, updated on 28-Oct-2024

Summary

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Official Symbol
Heatr4provided by MGI
Official Full Name
HEAT repeat containing 4provided by MGI
Primary source
MGI:MGI:4937307
See related
Ensembl:ENSMUSG00000090843 AllianceGenome:MGI:4937307
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm17673
Summary
Predicted to enable oxidoreductase activity. Orthologous to human HEATR4 (HEAT repeat containing 4). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Ubiquitous expression in testis adult (RPKM 12.4), adrenal adult (RPKM 6.5) and 27 other tissues See more
Orthologs
human all
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Genomic context

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See Heatr4 in Genome Data Viewer
Location:
12 D1; 12 38.98 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (83991987..84031643, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (83945213..83984871, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene NUMB endocytic adaptor protein Neighboring gene endothelin converting enzyme 2 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E474 Neighboring gene predicted gene, 31386 Neighboring gene ribosomal oxygenase 1 Neighboring gene STARR-seq mESC enhancer starr_32720 Neighboring gene STARR-seq mESC enhancer starr_32721 Neighboring gene acyl-CoA thioesterase 2 Neighboring gene acyl-CoA thioesterase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables oxidoreductase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
HEAT repeat-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001376939.1 → NP_001363868.1  HEAT repeat-containing protein 4

    Status: VALIDATED

    Source sequence(s)
    AC133183
    UniProtKB/TrEMBL
    E9Q357
    Related
    ENSMUSP00000129832.3, ENSMUST00000164935.3
    Conserved Domains (2) summary
    sd00044
    Location:679 → 720
    HEAT; HEAT repeat [structural motif]
    pfam13646
    Location:678 → 800
    HEAT_2; HEAT repeats

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    83991987..84031643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157137.1 → XP_036013030.1  HEAT repeat-containing protein 4 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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