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EXOSC9 exosome component 9 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101053890, updated on 11-Apr-2024

Summary

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Gene symbol
EXOSC9
Gene description
exosome component 9
See related
EnsemblRapid:ENSSBOG00000020744
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See EXOSC9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100934.1 (43971580..43986982, complement)

NW_024100934.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily C member 3 Neighboring gene Bardet-Biedl syndrome 7 Neighboring gene cyclin A2 Neighboring gene small integral membrane protein 43 Neighboring gene annexin A5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100934 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100934.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    43971580..43986982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003936230.3 → XP_003936279.1  exosome complex component RRP45

    UniProtKB/TrEMBL
    A0A2K6SJU4
    Related
    ENSSBOP00000007655.1, ENSSBOT00000024412.2
    Conserved Domains (2) summary
    cd11368
    Location:6 → 264
    RNase_PH_RRP45; RRP45 subunit of eukaryotic exosome
    COG2123
    Location:10 → 271
    Rrp42; Exosome complex RNA-binding protein Rrp42, RNase PH superfamily [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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