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SNAI2 snail family transcriptional repressor 2 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101051676, updated on 8-Mar-2024

Summary

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Gene symbol
SNAI2
Gene description
snail family transcriptional repressor 2
See related
EnsemblRapid:ENSSBOG00000035774
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See SNAI2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100961.1 (1648482..1652280, complement)

NW_024100961.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene calaxin Neighboring gene pancreatic progenitor cell differentiation and proliferation factor like Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100961 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein SNAI2
Names
snail homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100961.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    1648482..1652280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003940860.3 → XP_003940909.1  zinc finger protein SNAI2

    See identical proteins and their annotated locations for XP_003940909.1

    UniProtKB/TrEMBL
    A0A2K6V5Q3
    Related
    ENSSBOP00000039492.1, ENSSBOT00000056453.2
    Conserved Domains (5) summary
    COG5189
    Location:101 → 182
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:187 → 207
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:130 → 150
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:213 → 235
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:200 → 223
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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