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POLR1A RNA polymerase I subunit A [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101049872, updated on 8-Mar-2024

Summary

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Gene symbol
POLR1A
Gene description
RNA polymerase I subunit A
See related
EnsemblRapid:ENSSBOG00000030262
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See POLR1A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100918.1 (95640207..95722633, complement)

NW_024100918.1Genomic Context describing neighboring genes Neighboring gene atonal bHLH transcription factor 8 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 5 Neighboring gene small nucleolar RNA SNORD94 Neighboring gene pentatricopeptide repeat domain 3 Neighboring gene inner membrane mitochondrial protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100918 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA1
Names
polymerase (RNA) I polypeptide A, 194kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100918.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    95640207..95722633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003942532.3 → XP_003942581.1  DNA-directed RNA polymerase I subunit RPA1

    UniProtKB/TrEMBL
    A0A2K6U795
    Related
    ENSSBOP00000027782.1, ENSSBOT00000044660.2
    Conserved Domains (4) summary
    cd02735
    Location:1199 → 1716
    RNAP_I_Rpa1_C; Largest subunit (Rpa1) of Eukaryotic RNA polymerase I (RNAP I), C-terminal domain
    PRK08566
    Location:4 → 1029
    PRK08566; DNA-directed RNA polymerase subunit A'; Validated
    cd01435
    Location:16 → 1004
    RNAP_I_RPA1_N; Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain
    pfam04998
    Location:958 → 1671
    RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5
Nucleotide Protein
Heading Accession and Version

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