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ZBTB40 zinc finger and BTB domain containing 40 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101049698, updated on 8-Mar-2024

Summary

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Gene symbol
ZBTB40
Gene description
zinc finger and BTB domain containing 40
See related
EnsemblRapid:ENSSBOG00000027235
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See ZBTB40 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100927.1 (66882407..66967046, complement)

NW_024100927.1Genomic Context describing neighboring genes Neighboring gene complement C1q A chain Neighboring gene EPH receptor A8 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene uncharacterized LOC120365957

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100927 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100927.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    66882407..66967046 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003934897.3 → XP_003934946.1  zinc finger and BTB domain-containing protein 40 isoform X1

    UniProtKB/TrEMBL
    A0A2K6TNY3, A0A2K6TP16
    Related
    ENSSBOP00000021373.1, ENSSBOT00000038209.2
    Conserved Domains (6) summary
    smart00225
    Location:25 → 113
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:857 → 1109
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:841 → 861
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:955 → 973
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:19 → 113
    BTB; BTB/POZ domain
    pfam13465
    Location:910 → 935
    zf-H2C2_2; Zinc-finger double domain

  2. XM_010345473.2 → XP_010343775.1  zinc finger and BTB domain-containing protein 40 isoform X3

    UniProtKB/TrEMBL
    A0A2K6TP16
    Related
    ENSSBOP00000043272.1, ENSSBOT00000071691.1
    Conserved Domains (6) summary
    smart00225
    Location:25 → 113
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:783 → 1035
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:767 → 787
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:881 → 899
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:19 → 113
    BTB; BTB/POZ domain
    pfam13465
    Location:836 → 861
    zf-H2C2_2; Zinc-finger double domain

  3. XM_010345472.2 → XP_010343774.1  zinc finger and BTB domain-containing protein 40 isoform X2

    UniProtKB/TrEMBL
    A0A2K6TP16
    Related
    ENSSBOP00000021384.1, ENSSBOT00000038220.2
    Conserved Domains (6) summary
    smart00225
    Location:25 → 113
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:864 → 1214
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:841 → 861
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:955 → 973
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:19 → 113
    BTB; BTB/POZ domain
    pfam13465
    Location:910 → 935
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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