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HIC2 HIC ZBTB transcriptional repressor 2 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101049359, updated on 8-Mar-2024

Summary

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Gene symbol
HIC2
Gene description
HIC ZBTB transcriptional repressor 2
See related
EnsemblRapid:ENSSBOG00000042006
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See HIC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100948.1 (9299306..9330994)

NW_024100948.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L29-like Neighboring gene small nucleolar RNA U13 Neighboring gene coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like Neighboring gene transmembrane protein 191C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100948 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypermethylated in cancer 2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100948.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    9299306..9330994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039462510.1 → XP_039318444.1  hypermethylated in cancer 2 protein

    UniProtKB/TrEMBL
    A0A2K6TMF9
    Conserved Domains (6) summary
    COG5048
    Location:558 → 612
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:534 → 554
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18334
    Location:25 → 144
    BTB_POZ_ZBTB30_HIC2; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 2 protein (Hic-2)
    pfam00096
    Location:532 → 554
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:574 → 599
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:502 → 551
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  2. XM_039462509.1 → XP_039318443.1  hypermethylated in cancer 2 protein

    UniProtKB/TrEMBL
    A0A2K6TMF9
    Related
    ENSSBOP00000045477.1, ENSSBOT00000069978.1
    Conserved Domains (6) summary
    COG5048
    Location:558 → 612
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:534 → 554
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18334
    Location:25 → 144
    BTB_POZ_ZBTB30_HIC2; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 2 protein (Hic-2)
    pfam00096
    Location:532 → 554
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:574 → 599
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:502 → 551
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
Nucleotide Protein
Heading Accession and Version

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