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NKX2-1 NK2 homeobox 1 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101045547, updated on 8-Mar-2024

Summary

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Gene symbol
NKX2-1
Gene description
NK2 homeobox 1
See related
EnsemblRapid:ENSSBOG00000048838
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Also known as
SFTA3
Orthologs
human mouse all
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Genomic context

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See NKX2-1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100921.1 (49643734..49690516)

NW_024100921.1Genomic Context describing neighboring genes Neighboring gene NK2 homeobox 8 Neighboring gene protein S100-A11-like Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC104650756

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100921 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Nkx-2.1
Names
surfactant associated 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100921.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    49643734..49690516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010334937.2 → XP_010333239.1  homeobox protein Nkx-2.1 isoform X1

    See identical proteins and their annotated locations for XP_010333239.1

    Conserved Domains (1) summary
    pfam00046
    Location:165 → 219
    Homeobox; Homeobox domain

  2. XM_010334939.1 → XP_010333241.1  homeobox protein Nkx-2.1 isoform X1

    See identical proteins and their annotated locations for XP_010333241.1

    Conserved Domains (1) summary
    pfam00046
    Location:165 → 219
    Homeobox; Homeobox domain

  3. XM_010334941.1 → XP_010333243.1  homeobox protein Nkx-2.1 isoform X1

    See identical proteins and their annotated locations for XP_010333243.1

    Related
    ENSSBOP00000048844.1, ENSSBOT00000059983.1
    Conserved Domains (1) summary
    pfam00046
    Location:165 → 219
    Homeobox; Homeobox domain

  4. XM_010334938.1 → XP_010333240.1  homeobox protein Nkx-2.1 isoform X2

    UniProtKB/TrEMBL
    A0A2K6UGM0
    Related
    ENSSBOP00000048253.1, ENSSBOT00000072485.1
    Conserved Domains (1) summary
    pfam00046
    Location:195 → 249
    Homeobox; Homeobox domain

RNA

  1. XR_005579362.1 RNA Sequence

  2. XR_005579361.1 RNA Sequence

  3. XR_005579368.1 RNA Sequence

  4. XR_744341.1 RNA Sequence

  5. XR_005579363.1 RNA Sequence

  6. XR_744348.2 RNA Sequence

  7. XR_005579370.1 RNA Sequence

  8. XR_005579365.1 RNA Sequence

  9. XR_005579367.1 RNA Sequence

  10. XR_744352.2 RNA Sequence

  11. XR_005579371.1 RNA Sequence

  12. XR_005579374.1 RNA Sequence

  13. XR_005579372.1 RNA Sequence

  14. XR_005579366.1 RNA Sequence

  15. XR_005579369.1 RNA Sequence

  16. XR_005579373.1 RNA Sequence

  17. XR_005579364.1 RNA Sequence

Nucleotide Protein
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