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ZEB1 zinc finger E-box binding homeobox 1 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101044327, updated on 8-Mar-2024

Summary

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Gene symbol
ZEB1
Gene description
zinc finger E-box binding homeobox 1
See related
EnsemblRapid:ENSSBOG00000032906
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See ZEB1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100933.1 (56211550..56408333)

NW_024100933.1Genomic Context describing neighboring genes Neighboring gene supervillin-like Neighboring gene zinc finger protein 438 Neighboring gene uncharacterized LOC101053053 Neighboring gene proline-rich protein 13-like Neighboring gene uncharacterized LOC120367557 Neighboring gene uncharacterized LOC120367568

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100933 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger E-box-binding homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100933.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    56211550..56408333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039478648.1 → XP_039334582.1  zinc finger E-box-binding homeobox 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K6UNS3
    Related
    ENSSBOP00000033597.2, ENSSBOT00000050512.2
    Conserved Domains (5) summary
    COG5271
    Location:27 → 197
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:906 → 926
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:240 → 262
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:946 → 971
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:581 → 629
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  2. XM_039478647.1 → XP_039334581.1  zinc finger E-box-binding homeobox 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K6UNS3
    Related
    ENSSBOP00000033594.2, ENSSBOT00000050509.2
    Conserved Domains (5) summary
    COG5271
    Location:27 → 198
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00017
    Location:907 → 927
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:241 → 263
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:947 → 972
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:582 → 630
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  3. XM_039478649.1 → XP_039334583.1  zinc finger E-box-binding homeobox 1 isoform X5

    UniProtKB/TrEMBL
    A0A2K6UNV4
    Conserved Domains (4) summary
    sd00017
    Location:688 → 708
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:22 → 44
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:728 → 753
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:363 → 411
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  4. XM_039478651.1 → XP_039334585.1  zinc finger E-box-binding homeobox 1 isoform X5

    UniProtKB/TrEMBL
    A0A2K6UNV4
    Conserved Domains (4) summary
    sd00017
    Location:688 → 708
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:22 → 44
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:728 → 753
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:363 → 411
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  5. XM_039478650.1 → XP_039334584.1  zinc finger E-box-binding homeobox 1 isoform X5

    UniProtKB/TrEMBL
    A0A2K6UNV4
    Conserved Domains (4) summary
    sd00017
    Location:688 → 708
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:22 → 44
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:728 → 753
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:363 → 411
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  6. XM_039478652.1 → XP_039334586.1  zinc finger E-box-binding homeobox 1 isoform X5

    UniProtKB/TrEMBL
    A0A2K6UNV4
    Conserved Domains (4) summary
    sd00017
    Location:688 → 708
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:22 → 44
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:728 → 753
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:363 → 411
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  7. XM_003938384.3 → XP_003938433.1  zinc finger E-box-binding homeobox 1 isoform X3

    UniProtKB/TrEMBL
    A0A2K6UNS3, A0A2K6UNU4
    Related
    ENSSBOP00000033568.2, ENSSBOT00000050483.2
    Conserved Domains (5) summary
    smart00389
    Location:577 → 613
    HOX; Homeodomain
    COG5048
    Location:913 → 966
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:890 → 910
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:224 → 246
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:930 → 955
    zf-H2C2_2; Zinc-finger double domain

  8. XM_010349057.2 → XP_010347359.1  zinc finger E-box-binding homeobox 1 isoform X4

    UniProtKB/TrEMBL
    A0A2K6UNS3
    Conserved Domains (5) summary
    smart00389
    Location:576 → 612
    HOX; Homeodomain
    COG5048
    Location:912 → 965
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:889 → 909
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:223 → 245
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:929 → 954
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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