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PES1 pescadillo ribosomal biogenesis factor 1 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101040621, updated on 8-Mar-2024

Summary

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Gene symbol
PES1
Gene description
pescadillo ribosomal biogenesis factor 1
See related
EnsemblRapid:ENSSBOG00000026073
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See PES1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100948.1 (1710643..1730948, complement)

NW_024100948.1Genomic Context describing neighboring genes Neighboring gene SEC14-like protein 4 Neighboring gene galactose-3-O-sulfotransferase 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene mitochondrial fission process 1 Neighboring gene SEC14 like lipid binding 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100948 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PeBoW complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pescadillo homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100948.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    1710643..1730948 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003938444.2 → XP_003938493.1  pescadillo homolog

    UniProtKB/TrEMBL
    A0A2K6TH97
    Related
    ENSSBOP00000019033.1, ENSSBOT00000035851.2
    Conserved Domains (3) summary
    COG5163
    Location:6 → 579
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
    pfam06732
    Location:9 → 278
    Pescadillo_N; Pescadillo N-terminus
    pfam16589
    Location:328 → 414
    BRCT_2; BRCT domain, a BRCA1 C-terminus domain
Nucleotide Protein
Heading Accession and Version

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