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SF3B5 splicing factor 3b subunit 5 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101040015, updated on 8-Mar-2024

Summary

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Gene symbol
SF3B5
Gene description
splicing factor 3b subunit 5
See related
EnsemblRapid:ENSSBOG00000006122
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See SF3B5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100919.1 (25310506..25311295)

NW_024100919.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene syntaxin 11 Neighboring gene translation initiation factor IF-2-like Neighboring gene PLAG1 like zinc finger 1 Neighboring gene zinc finger C2HC-type containing 1B Neighboring gene 40S ribosomal protein S27-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100919 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100919.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    25310506..25311295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003926844.3 → XP_003926893.1  splicing factor 3B subunit 5

    See identical proteins and their annotated locations for XP_003926893.1

    UniProtKB/TrEMBL
    A0A2K6S1K6
    Related
    ENSSBOP00000001262.1, ENSSBOT00000006822.2
    Conserved Domains (1) summary
    pfam07189
    Location:3 → 77
    SF3b10; Splicing factor 3B subunit 10 (SF3b10)
Nucleotide Protein
Heading Accession and Version

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