U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ZBTB49 zinc finger and BTB domain containing 49 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101039400, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ZBTB49
Gene description
zinc finger and BTB domain containing 49
See related
EnsemblRapid:ENSSBOG00000023351
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ZBTB49 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100920.1 (112625023..112656674)

NW_024100920.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120363664 Neighboring gene Ly1 antibody reactive Neighboring gene neuronal vesicle trafficking associated 1 Neighboring gene syntaxin 18 Neighboring gene 40S ribosomal protein S7-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024100920 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger and BTB domain-containing protein 49

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100920.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    112625023..112656674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003934674.2 → XP_003934723.1  zinc finger and BTB domain-containing protein 49

    See identical proteins and their annotated locations for XP_003934723.1

    UniProtKB/TrEMBL
    A0A2K6T0H3
    Related
    ENSSBOP00000013155.1, ENSSBOT00000029949.2
    Conserved Domains (6) summary
    smart00225
    Location:26 → 119
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:385 → 543
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:510 → 530
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:396 → 418
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:15 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:550 → 575
    zf-H2C2_2; Zinc-finger double domain

  2. XM_010345284.1 → XP_010343586.1  zinc finger and BTB domain-containing protein 49

    See identical proteins and their annotated locations for XP_010343586.1

    UniProtKB/TrEMBL
    A0A2K6T0H3
    Conserved Domains (6) summary
    smart00225
    Location:26 → 119
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:385 → 543
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:510 → 530
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:396 → 418
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:15 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:550 → 575
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.