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SC5D sterol-C5-desaturase [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101038292, updated on 8-Mar-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
See related
EnsemblRapid:ENSSBOG00000020424
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Also known as
SC5DL
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100923.1 (26033584..26053585)

NW_024100923.1Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor kainate type subunit 4 Neighboring gene uncharacterized LOC120364702 Neighboring gene tubulin-specific chaperone cofactor E-like protein Neighboring gene zinc finger protein 574-like Neighboring gene vitamin K epoxide reductase complex subunit 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100923 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase
Names
sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100923.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    26033584..26053585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003923584.3 → XP_003923633.1  lathosterol oxidase

    See identical proteins and their annotated locations for XP_003923633.1

    UniProtKB/TrEMBL
    A0A2K6SHP1
    Related
    ENSSBOP00000006904.1, ENSSBOT00000023656.2
    Conserved Domains (2) summary
    COG3000
    Location:42 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    pfam04116
    Location:123 → 253
    FA_hydroxylase; Fatty acid hydroxylase superfamily

  2. XM_010334422.2 → XP_010332724.1  lathosterol oxidase

    See identical proteins and their annotated locations for XP_010332724.1

    UniProtKB/TrEMBL
    A0A2K6SHP1
    Conserved Domains (2) summary
    COG3000
    Location:42 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    pfam04116
    Location:123 → 253
    FA_hydroxylase; Fatty acid hydroxylase superfamily
Nucleotide Protein
Heading Accession and Version

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