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TBX5 T-box transcription factor 5 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101038242, updated on 8-Mar-2024

Summary

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Gene symbol
TBX5
Gene description
T-box transcription factor 5
See related
EnsemblRapid:ENSSBOG00000041794
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See TBX5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100924.1 (18584477..18638840)

NW_024100924.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L26-like Neighboring gene ribosome biogenesis protein NSA2 homolog Neighboring gene uncharacterized LOC101028200 Neighboring gene mediator of DNA damage checkpoint protein 1-like Neighboring gene tubulin beta chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100924 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac left ventricle formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pattern specification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX5
Names
T-box 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100924.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    18584477..18638840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003932215.3 → XP_003932264.1  T-box transcription factor TBX5 isoform X2

    See identical proteins and their annotated locations for XP_003932264.1

    UniProtKB/TrEMBL
    A0A2K6TFJ5
    Conserved Domains (1) summary
    cd00182
    Location:53 → 241
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

  2. XM_010342835.2 → XP_010341137.1  T-box transcription factor TBX5 isoform X1

    Conserved Domains (1) summary
    cd00182
    Location:69 → 257
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

  3. XM_010342837.2 → XP_010341139.1  T-box transcription factor TBX5 isoform X2

    See identical proteins and their annotated locations for XP_010341139.1

    UniProtKB/TrEMBL
    A0A2K6TFJ5
    Related
    ENSSBOP00000018437.1, ENSSBOT00000035253.2
    Conserved Domains (1) summary
    cd00182
    Location:53 → 241
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
Nucleotide Protein
Heading Accession and Version

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