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POLR2A RNA polymerase II subunit A [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101037169, updated on 8-Mar-2024

Summary

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Gene symbol
POLR2A
Gene description
RNA polymerase II subunit A
See related
EnsemblRapid:ENSSBOG00000000808
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See POLR2A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100930.1 (6956439..6989080)

NW_024100930.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 4 Neighboring gene solute carrier family 35 member G6 Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene TNF superfamily member 12 Neighboring gene TNF superfamily member 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100930 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB1
Names
polymerase (RNA) II (DNA directed) polypeptide A, 220kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100930.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    6956439..6989080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003929165.3 → XP_003929214.1  DNA-directed RNA polymerase II subunit RPB1

    See identical proteins and their annotated locations for XP_003929214.1

    UniProtKB/TrEMBL
    A0A2K6RYV7
    Related
    ENSSBOP00000000301.1, ENSSBOT00000001403.2
    Conserved Domains (5) summary
    cd02584
    Location:1058 → 1476
    RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
    smart01104
    Location:1491 → 1610
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    cd02733
    Location:19 → 876
    RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
    pfam05109
    Location:1854 → 1959
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam04992
    Location:896 → 1079
    RNA_pol_Rpb1_6; RNA polymerase Rpb1, domain 6
Nucleotide Protein
Heading Accession and Version

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