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ZBTB20 zinc finger and BTB domain containing 20 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101034445, updated on 8-Mar-2024

Summary

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Gene symbol
ZBTB20
Gene description
zinc finger and BTB domain containing 20
See related
EnsemblRapid:ENSSBOG00000031004
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See ZBTB20 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100931.1 (36579034..36743863)

NW_024100931.1Genomic Context describing neighboring genes Neighboring gene cystathionine beta-synthase-like protein Neighboring gene 60S ribosomal protein L23a-like Neighboring gene uncharacterized LOC104652557 Neighboring gene T cell immunoreceptor with Ig and ITIM domains Neighboring gene zinc finger protein 80

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100931 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100931.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    36579034..36743863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010345963.1 → XP_010344265.1  zinc finger and BTB domain-containing protein 20 isoform X2

    See identical proteins and their annotated locations for XP_010344265.1

    UniProtKB/TrEMBL
    A0A2K6UBR3
    Conserved Domains (6) summary
    smart00225
    Location:32 → 123
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:432 → 574
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:507 → 527
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:561 → 583
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:21 → 119
    BTB; BTB/POZ domain
    pfam13465
    Location:575 → 600
    zf-H2C2_2; Zinc-finger double domain

  2. XM_010345962.1 → XP_010344264.1  zinc finger and BTB domain-containing protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A2K6UBU8
    Related
    ENSSBOP00000029335.2, ENSSBOT00000046217.2
    Conserved Domains (6) summary
    smart00225
    Location:105 → 196
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:505 → 647
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:580 → 600
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:634 → 656
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:94 → 192
    BTB; BTB/POZ domain
    pfam13465
    Location:648 → 673
    zf-H2C2_2; Zinc-finger double domain

  3. XM_010345964.2 → XP_010344266.1  zinc finger and BTB domain-containing protein 20 isoform X2

    See identical proteins and their annotated locations for XP_010344266.1

    UniProtKB/TrEMBL
    A0A2K6UBR3
    Conserved Domains (6) summary
    smart00225
    Location:32 → 123
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:432 → 574
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:507 → 527
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:561 → 583
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:21 → 119
    BTB; BTB/POZ domain
    pfam13465
    Location:575 → 600
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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