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LOC101031875 small nuclear ribonucleoprotein F [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101031875, updated on 16-Nov-2023

Summary

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Gene symbol
LOC101031875
Gene description
small nuclear ribonucleoprotein F
See related
EnsemblRapid:ENSSBOG00000012868
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
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Genomic context

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See LOC101031875 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100924.1 (100222426..100222835, complement)

NW_024100924.1Genomic Context describing neighboring genes Neighboring gene voltage-dependent anion-selective channel protein 2-like Neighboring gene probable ribosome biogenesis protein RLP24 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene killer cell lectin like receptor G1 Neighboring gene mannose-6-phosphate receptor, cation dependent Neighboring gene polyhomeotic homolog 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100924 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100924.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    100222426..100222835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003926678.3 → XP_003926727.2  small nuclear ribonucleoprotein F

    UniProtKB/TrEMBL
    A0A2K6S505, A0A2K6V8A9
    Related
    ENSSBOP00000002458.2, ENSSBOT00000014094.2
    Conserved Domains (1) summary
    cd01722
    Location:6 → 74
    Sm_F; Sm protein F
Nucleotide Protein
Heading Accession and Version

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