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LARP6 La ribonucleoprotein 6, translational regulator [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101031259, updated on 8-Mar-2024

Summary

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Gene symbol
LARP6
Gene description
La ribonucleoprotein 6, translational regulator
See related
EnsemblRapid:ENSSBOG00000024190
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See LARP6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100921.1 (101116710..101138968, complement)

NW_024100921.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene uveal autoantigen with coiled-coil domains and ankyrin repeats Neighboring gene uncharacterized LOC104651663 Neighboring gene heterogeneous nuclear ribonucleoproteins C1/C2-like Neighboring gene THAP domain containing 10 Neighboring gene leucine rich repeat containing 49

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100921 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
la-related protein 6
Names
La ribonucleoprotein domain family member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100921.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    101116710..101138968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039468804.1 → XP_039324738.1  la-related protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A2K6T5H6
    Related
    ENSSBOP00000014889.2, ENSSBOT00000031687.2
    Conserved Domains (3) summary
    cd08033
    Location:93 → 169
    LARP_6; La RNA-binding domain of La-related protein 6
    pfam12901
    Location:452 → 484
    SUZ-C; SUZ-C motif
    cd12289
    Location:184 → 292
    RRM_LARP6; RNA recognition motif (RRM) found in La-related protein 6 (LARP6) and similar proteins

  2. XM_039468805.1 → XP_039324739.1  la-related protein 6 isoform X2

Nucleotide Protein
Heading Accession and Version

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