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ASIC1 acid sensing ion channel subunit 1 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101028778, updated on 8-Mar-2024

Summary

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Gene symbol
ASIC1
Gene description
acid sensing ion channel subunit 1
See related
EnsemblRapid:ENSSBOG00000034628
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See ASIC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100924.1 (64964712..64992933)

NW_024100924.1Genomic Context describing neighboring genes Neighboring gene aquaporin 6 Neighboring gene Rac GTPase activating protein 1 Neighboring gene uncharacterized LOC120365074 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D1 Neighboring gene cytochrome c oxidase assembly protein COX14 Neighboring gene glycerol-3-phosphate dehydrogenase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100924 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid-sensing ion channel 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100924.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    64964712..64992933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039472428.1 → XP_039328362.1  acid-sensing ion channel 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K6UYR6
    Related
    ENSSBOP00000037057.2, ENSSBOT00000053995.2
    Conserved Domains (1) summary
    TIGR00859
    Location:19 → 510
    ENaC; sodium channel transporter

  2. XM_003939151.2 → XP_003939200.1  acid-sensing ion channel 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K6UYS9
    Related
    ENSSBOP00000037076.1, ENSSBOT00000054014.2
    Conserved Domains (1) summary
    cl02990
    Location:63 → 543
    ASC; Amiloride-sensitive sodium channel
Nucleotide Protein
Heading Accession and Version

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