U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SSB small RNA binding exonuclease protection factor La [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101027604, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SSB
Gene description
small RNA binding exonuclease protection factor La
See related
EnsemblRapid:ENSSBOG00000027204
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SSB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100922.1 (33623788..33637996)

NW_024100922.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L27a-like Neighboring gene kelch like family member 23 Neighboring gene small nucleolar RNA U13 Neighboring gene methyltransferase 5, N6-adenosine Neighboring gene ubiquitin protein ligase E3 component n-recognin 3 Neighboring gene heterochromatin protein 1-binding protein 3-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024100922 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
lupus La protein
Names
Sjogren syndrome antigen B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100922.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    33623788..33637996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003921892.3 → XP_003921941.1  lupus La protein

    UniProtKB/TrEMBL
    A0A2K6TNV2
    Related
    ENSSBOP00000021319.1, ENSSBOT00000038155.2
    Conserved Domains (3) summary
    cd08028
    Location:10 → 91
    LARP_3; La RNA-binding domain of La-related protein 3
    cd12291
    Location:112 → 183
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    pfam08777
    Location:231 → 334
    RRM_3; RNA binding motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.