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galnt2.S polypeptide N-acetylgalactosaminyltransferase 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 101027298, updated on 4-Nov-2024

Summary

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Official Symbol
galnt2.S
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 2 S homeolog
Primary source
Xenbase:XB-GENE-6486521
Locus tag
XELAEV_18029062mg
See related
EnsemblRapid:ENSXLAG00005008328 AllianceGenome:Xenbase:XB-GENE-6486521
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable carbohydrate binding activity and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to act upstream of or within protein O-linked glycosylation. Predicted to be located in Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type II. Orthologous to human GALNT2 (polypeptide N-acetylgalactosaminyltransferase 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See galnt2.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (44281914..44327506, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (44128512..44174059, complement)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene protein kinase C delta type-like Neighboring gene uncharacterized LOC121394200 Neighboring gene TATA-box binding protein associated factor 5 like S homeolog Neighboring gene calpain 9 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 2
Names
GalNAc-T2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    44281914..44327506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018265270.2 → XP_018120759.1  polypeptide N-acetylgalactosaminyltransferase 2

    UniProtKB/TrEMBL
    A0A1L8G2A6, A0A974CR07, A0A974CWX2
    Related
    ENSXLAP00005024072.1, ENSXLAT00005024780.1
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases
Research Materials