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FCN1 ficolin 1 [ Papio anubis (olive baboon) ]

Gene ID: 101010318, updated on 8-Mar-2024

Summary

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Gene symbol
FCN1
Gene description
ficolin 1
See related
Ensembl:ENSPANG00000032956
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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See FCN1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 13 NC_044988.1 (104075161..104084933)
103 previous assembly Panu_3.0 (GCF_000264685.3) 15 NC_018166.2 (3334964..3344736)

Chromosome 13 - NC_044988.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103878074 Neighboring gene uncharacterized LOC103878076 Neighboring gene ficolin-2 Neighboring gene ficolin-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ficolin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044988.1 Reference Panubis1.0 Primary Assembly

    Range
    104075161..104084933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003911116.5 → XP_003911165.1  ficolin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3M827, A0A8I5R7S1
    Related
    ENSPANP00000031875.2, ENSPANT00000048349.2
    Conserved Domains (2) summary
    pfam01391
    Location:51 → 107
    Collagen; Collagen triple helix repeat (20 copies)
    cd00087
    Location:115 → 325
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

  2. XM_031654693.1 → XP_031510553.1  ficolin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8I5R7S1
    Conserved Domains (2) summary
    pfam01391
    Location:34 → 69
    Collagen; Collagen triple helix repeat (20 copies)
    cd00087
    Location:77 → 287
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
Nucleotide Protein
Heading Accession and Version

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