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SGCD sarcoglycan delta [ Papio anubis (olive baboon) ]

Gene ID: 101010230, updated on 8-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
Ensembl:ENSPANG00000003591
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 5 NC_044980.1 (148983420..149422085)
103 previous assembly Panu_3.0 (GCF_000264685.3) 6 NC_018157.2 (150662361..151097912)

Chromosome 5 - NC_044980.1Genomic Context describing neighboring genes Neighboring gene CST complex subunit STN1-like Neighboring gene peptidyl-prolyl cis-trans isomerase G pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene MICOS complex subunit MIC26 pseudogene Neighboring gene T cell immunoglobulin and mucin domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044980.1 Reference Panubis1.0 Primary Assembly

    Range
    148983420..149422085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009209470.4 → XP_009207734.2  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A096N830
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_017960078.3 → XP_017815567.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A096N830, A0A8I5MZV2
    Related
    ENSPANP00000050906.1, ENSPANT00000060951.1
    Conserved Domains (1) summary
    pfam04790
    Location:24 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_021940234.2 → XP_021795926.1  delta-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam04790
    Location:25 → 239
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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