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GPC6 glypican 6 [ Papio anubis (olive baboon) ]

Gene ID: 101000702, updated on 8-Mar-2024

Summary

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Gene symbol
GPC6
Gene description
glypican 6
See related
Ensembl:ENSPANG00000029836
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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See GPC6 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 15 NC_044990.1 (71722823..72904543)
103 previous assembly Panu_3.0 (GCF_000264685.3) 17 NC_018168.2 (71023923..72213894)

Chromosome 15 - NC_044990.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103879399 Neighboring gene uncharacterized LOC103879400 Neighboring gene uncharacterized LOC110741650 Neighboring gene phosphorylated adapter RNA export protein pseudogene Neighboring gene uncharacterized LOC116270533 Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene dopachrome tautomerase Neighboring gene TDP-glucose 4,6-dehydratase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044990.1 Reference Panubis1.0 Primary Assembly

    Range
    71722823..72904543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031655722.1 → XP_031511582.1  glypican-6 isoform X2

    Conserved Domains (1) summary
    pfam01153
    Location:9 → 504
    Glypican

  2. XM_021929443.2 → XP_021785135.2  glypican-6 isoform X1

    UniProtKB/TrEMBL
    A0A2I3MJX3
    Related
    ENSPANP00000036088.2, ENSPANT00000035393.2
    Conserved Domains (1) summary
    pfam01153
    Location:22 → 548
    Glypican

  3. XM_031655723.1 → XP_031511583.1  glypican-6 isoform X3

    Conserved Domains (1) summary
    pfam01153
    Location:1 → 478
    Glypican
Nucleotide Protein
Heading Accession and Version

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