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LOC100999807 chondroitin sulfate synthase 3 [ Papio anubis (olive baboon) ]

Gene ID: 100999807, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100999807
Gene description
chondroitin sulfate synthase 3
See related
Ensembl:ENSPANG00000040658
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Also known as
CHSY3
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Genomic context

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See LOC100999807 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 5 NC_044980.1 (122634053..122928427)
103 previous assembly Panu_3.0 (GCF_000264685.3) 6 NC_018157.2 (124255402..124551933)

Chromosome 5 - NC_044980.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 19 Neighboring gene membrane integral NOTCH2 associated receptor 2 Neighboring gene heat shock cognate 71 kDa protein pseudogene Neighboring gene chondroitin sulfate synthase 3 pseudogene Neighboring gene uncharacterized LOC116274956

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044980.1 Reference Panubis1.0 Primary Assembly

    Range
    122634053..122928427
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021939661.2 → XP_021795353.2  chondroitin sulfate synthase 3

    UniProtKB/TrEMBL
    A0A8I5N9P9
    Related
    ENSPANP00000058184.1, ENSPANT00000076687.1
    Conserved Domains (3) summary
    pfam16214
    Location:45 → 167
    AC_N; Adenylyl cyclase N-terminal extracellular and transmembrane region
    pfam05679
    Location:328 → 864
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:173 → 398
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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