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SPTLC1 serine palmitoyltransferase long chain base subunit 1 [ Papio anubis (olive baboon) ]

Gene ID: 100999407, updated on 8-Mar-2024

Summary

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Gene symbol
SPTLC1
Gene description
serine palmitoyltransferase long chain base subunit 1
See related
Ensembl:ENSPANG00000024808
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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See SPTLC1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
19
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 13 NC_044988.1 (5765144..5839423)
103 previous assembly Panu_3.0 (GCF_000264685.3) 15 NC_018166.2 (101968605..102043120, complement)

Chromosome 13 - NC_044988.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 subunit 2 Neighboring gene 40S ribosomal protein S2 pseudogene Neighboring gene putative UPF0607 protein ENSP00000382826 Neighboring gene uncharacterized LOC116270116 Neighboring gene receptor tyrosine kinase like orphan receptor 2 Neighboring gene 60S ribosomal protein L3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044988.1 Reference Panubis1.0 Primary Assembly

    Range
    5765144..5839423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003911970.4 → XP_003912019.1  serine palmitoyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_003912019.1

    UniProtKB/TrEMBL
    A0A096P229
    Related
    ENSPANP00000019404.2, ENSPANT00000024568.3
    Conserved Domains (1) summary
    cl18945
    Location:11 → 472
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  2. XM_031654048.1 → XP_031509908.1  serine palmitoyltransferase 1 isoform X2

    Conserved Domains (1) summary
    cl18945
    Location:11 → 384
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  3. XM_021927683.2 → XP_021783375.1  serine palmitoyltransferase 1 isoform X4

    Conserved Domains (1) summary
    cl18945
    Location:11 → 147
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  4. XM_009189183.3 → XP_009187447.1  serine palmitoyltransferase 1 isoform X5

    See identical proteins and their annotated locations for XP_009187447.1

    UniProtKB/TrEMBL
    A0A2I3MYY5
    Related
    ENSPANP00000040850.1, ENSPANT00000056340.2
    Conserved Domains (1) summary
    cl18945
    Location:11 → 141
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  5. XM_031654049.1 → XP_031509909.1  serine palmitoyltransferase 1 isoform X3

    Conserved Domains (1) summary
    cl18945
    Location:16 → 345
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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