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RIGI RNA sensor RIG-I [ Papio anubis (olive baboon) ]

Gene ID: 100997060, updated on 8-Mar-2024

Summary

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Gene symbol
RIGI
Gene description
RNA sensor RIG-I
See related
Ensembl:ENSPANG00000025269
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Also known as
DDX58
Orthologs
human mouse all
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Genomic context

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See RIGI in Genome Data Viewer
Location:
chromosome: 13
Exon count:
20
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 13 NC_044988.1 (60807542..60880108, complement)
103 previous assembly Panu_3.0 (GCF_000264685.3) 15 NC_018166.2 (43436666..43509672)

Chromosome 13 - NC_044988.1Genomic Context describing neighboring genes Neighboring gene ADP/ATP translocase 2 pseudogene Neighboring gene aconitase 1 Neighboring gene uncharacterized LOC116270032 Neighboring gene TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase Neighboring gene DNA fragmentation factor subunit beta pseudogene Neighboring gene small integral membrane protein 27 Neighboring gene NADH:ubiquinone oxidoreductase subunit B6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX58
Names
DExD/H-box helicase 58

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044988.1 Reference Panubis1.0 Primary Assembly

    Range
    60807542..60880108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003911615.4 → XP_003911664.1  probable ATP-dependent RNA helicase DDX58 isoform X2

    UniProtKB/TrEMBL
    A0A096P1D9, A0A8I5R2H2
    Related
    ENSPANP00000019164.2, ENSPANT00000026031.3
    Conserved Domains (5) summary
    COG1111
    Location:244 → 796
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd08817
    Location:100 → 189
    CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
    cd15805
    Location:805 → 918
    RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
    cd18073
    Location:241 → 442
    DEXHc_RIG-I_DDX58; DEXH-box helicase domain of RIG-I
    cl14633
    Location:2 → 92
    DD; Death Domain Superfamily of protein-protein interaction domains

  2. XM_009188651.3 → XP_009186915.1  probable ATP-dependent RNA helicase DDX58 isoform X4

    UniProtKB/TrEMBL
    A0A8I5R2H2
    Conserved Domains (4) summary
    COG1111
    Location:97 → 649
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd15805
    Location:658 → 771
    RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
    cd18073
    Location:94 → 295
    DEXHc_RIG-I_DDX58; DEXH-box helicase domain of RIG-I
    cl14633
    Location:1 → 42
    DD; Death Domain Superfamily of protein-protein interaction domains

  3. XM_031654298.1 → XP_031510158.1  probable ATP-dependent RNA helicase DDX58 isoform X1

    UniProtKB/TrEMBL
    A0A8I5R2H2
    Conserved Domains (5) summary
    COG1111
    Location:270 → 822
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd08817
    Location:126 → 215
    CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
    cd15805
    Location:831 → 944
    RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
    cd18073
    Location:267 → 468
    DEXHc_RIG-I_DDX58; DEXH-box helicase domain of RIG-I
    cl14633
    Location:2 → 118
    DD; Death Domain Superfamily of protein-protein interaction domains

  4. XM_021927458.2 → XP_021783150.1  probable ATP-dependent RNA helicase DDX58 isoform X3

    UniProtKB/TrEMBL
    A0A8I5R2H2
    Conserved Domains (4) summary
    COG1111
    Location:196 → 748
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd08817
    Location:52 → 141
    CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
    cd15805
    Location:757 → 870
    RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
    cd18073
    Location:193 → 394
    DEXHc_RIG-I_DDX58; DEXH-box helicase domain of RIG-I
Nucleotide Protein
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