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LINC02607 long intergenic non-protein coding RNA 2607 [ Homo sapiens (human) ]

Gene ID: 100996635, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02607provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2607provided by HGNC
Primary source
HGNC:HGNC:54049
See related
Ensembl:ENSG00000228971 AllianceGenome:HGNC:54049
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward brain (RPKM 5.2) See more
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Genomic context

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Location:
1p21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (95510116..95515464)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (95358159..95363508)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (95975672..95981020)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985420 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:95873423-95874034 Neighboring gene NANOG hESC enhancer GRCh37_chr1:95903681-95904235 Neighboring gene long intergenic non-protein coding RNA 1761 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:95983694-95984619 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96048206-96048858 Neighboring gene uncharacterized LOC101928219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:96134923-96135424 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:96135425-96135924 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:96207937-96209136 Neighboring gene uncharacterized LOC124904592 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96468667-96469209 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96469210-96469751 Neighboring gene long intergenic non-protein coding RNA 2790

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110621.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL356479, BC067883
    Related
    ENST00000411798.2

  2. NR_110622.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon and is shorter compared to variant 1.
    Source sequence(s)
    AL356479, BC045746, HY120625
    Related
    ENST00000653589.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    95510116..95515464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    95358159..95363508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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