U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC00690 long intergenic non-protein coding RNA 690 [ Homo sapiens (human) ]

Gene ID: 100996597, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC00690provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 690provided by HGNC
Primary source
HGNC:HGNC:44503
See related
Ensembl:ENSG00000233570 AllianceGenome:HGNC:44503
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.2) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
3p24.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (16536318..16541373)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (16537452..16542498)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (16577825..16582880)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene raftlin, lipid raft linker 1 Neighboring gene uncharacterized LOC124906220 Neighboring gene NANOG hESC enhancer GRCh37_chr3:16497386-16497905 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19544 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19545 Neighboring gene uncharacterized LOC124906219 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:16524187-16525039 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19546 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19547 Neighboring gene NANOG hESC enhancer GRCh37_chr3:16539919-16540420 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19550 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19551 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14117 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14118 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:16556589-16556764 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14119 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:16557992-16558492 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:16558493-16558993 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19552 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:16577170-16577365 Neighboring gene deleted in azoospermia like Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:16699444-16700249 Neighboring gene Sharpr-MPRA regulatory region 448 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:16712625-16713593 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:16717988-16718488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:16718489-16718989 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:16728537-16729494 Neighboring gene chromodomain Y-like protein Neighboring gene CDYL pseudogene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103843.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC034913, BX100558
    Related
    ENST00000429949.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    16536318..16541373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    16537452..16542498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases