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FAM230D family with sequence similarity 230 member D [ Homo sapiens (human) ]

Gene ID: 100996415, updated on 10-Oct-2023

Summary

Official Symbol
FAM230Dprovided by HGNC
Official Full Name
family with sequence similarity 230 member Dprovided by HGNC
Primary source
HGNC:HGNC:53910
See related
AllianceGenome:HGNC:53910
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC02592
Expression
Restricted expression toward testis (RPKM 11.9) See more
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Genomic context

See FAM230D in Genome Data Viewer
Location:
22q11.21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (18178026..18205909, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (18849936..18878111, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (18660793..18688676, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905076 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18653 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18654 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18638089-18638590 Neighboring gene ubiquitin specific peptidase 18 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:18647775-18648464 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr22:18648465-18649153 Neighboring gene OCT4 hESC enhancer GRCh37_chr22:18685927-18686428 Neighboring gene uncharacterized LOC105372858 Neighboring gene protein phosphatase 1 regulatory subunit 26-like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • long intergenic non-protein coding RNA 2592

Clone Names

  • AC008079.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136570.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008079

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    18178026..18205909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    18849936..18878111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)