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GRK3-AS1 GRK3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100996404, updated on 22-Oct-2024

Summary

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Official Symbol
GRK3-AS1provided by HGNC
Official Full Name
GRK3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55679
See related
Ensembl:ENSG00000234884 AllianceGenome:HGNC:55679
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 5.1) See more
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Genomic context

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See GRK3-AS1 in Genome Data Viewer
Location:
22q12.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (25560888..25565416, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (26022040..26026567, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (25956855..25961383, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene conserved acetylation island sequence 2 enhancer Neighboring gene crystallin beta B2 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:25868192-25868692 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:25868693-25869193 Neighboring gene uncharacterized LOC124905094 Neighboring gene microRNA 6817 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18786 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13562 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13561 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr22:25961339-25961854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18787 Neighboring gene G protein-coupled receptor kinase 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:26001784-26002284 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:26015847-26016633 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13563 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13564 Neighboring gene YES1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18788 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr22:26099534-26100733 Neighboring gene RNA, 5S ribosomal pseudogene 494

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CTA-407F11.8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183556.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329

  2. NR_183557.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329

  3. NR_183558.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329

  4. NR_183559.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329

  5. NR_183560.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329
    Related
    ENST00000668059.2

  6. NR_183561.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329

  7. NR_183562.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329

  8. NR_183563.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329

  9. NR_183564.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329

  10. NR_183565.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329

  11. NR_183566.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329

  12. NR_183567.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329
    Related
    ENST00000661676.2

  13. NR_183568.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329
    Related
    ENST00000818428.1

  14. NR_183569.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329
    Related
    ENST00000818423.1

  15. NR_183570.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329
    Related
    ENST00000818424.1

  16. NR_183571.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022329
    Related
    ENST00000818425.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    25560888..25565416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    26022040..26026567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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