U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02169 long intergenic non-protein coding RNA 2169 [ Homo sapiens (human) ]

Gene ID: 100996338, updated on 10-Oct-2023

Summary

Official Symbol
LINC02169provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2169provided by HGNC
Primary source
HGNC:HGNC:53031
See related
AllianceGenome:HGNC:53031
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.5) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
16q12.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (54245544..54270879, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (60043538..60068873, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (54279456..54304791, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene FTO alpha-ketoglutarate dependent dioxygenase Neighboring gene Sharpr-MPRA regulatory region 2551 Neighboring gene uncharacterized LOC105371271 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr16:54082723-54083657 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:54083658-54084591 Neighboring gene FTO intronic transcript 1 Neighboring gene VISTA enhancer hs52 Neighboring gene Sharpr-MPRA regulatory region 5065 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54228087-54228979 Neighboring gene Sharpr-MPRA regulatory region 10961 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54318795-54319714 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54319715-54320634 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:54320768-54321268 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:54321269-54321769 Neighboring gene VISTA enhancer hs51 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:54325084-54325965 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:54364959-54365668 Neighboring gene iroquois homeobox 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:54396413-54396916 Neighboring gene uncharacterized LOC105371272 Neighboring gene long intergenic non-protein coding RNA 2140

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126340.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BG201828, HY050027, HY055259, HY233965

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    54245544..54270879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    60043538..60068873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)